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research article

Grand canonical Brownian dynamics simulations of adsorption and self-assembly of SAS-6 rings on a surface

Melo, Santiago Gomez
•
Woerthmueller, Dennis
•
Gonczy, Pierre  
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February 28, 2023
Journal Of Chemical Physics

The Spindle Assembly Abnormal Protein 6 (SAS-6) forms dimers, which then self-assemble into rings that are critical for the nine-fold symmetry of the centriole organelle. It has recently been shown experimentally that the self-assembly of SAS-6 rings is strongly facilitated on a surface, shifting the reaction equilibrium by four orders of magnitude compared to the bulk. Moreover, a fraction of non-canonical symmetries (i.e., different from nine) was observed. In order to understand which aspects of the system are relevant to ensure efficient self-assembly and selection of the nine-fold symmetry, we have performed Brownian dynamics computer simulation with patchy particles and then compared our results with the experimental ones. Adsorption onto the surface was simulated by a grand canonical Monte Carlo procedure and random sequential adsorption kinetics. Furthermore, self-assembly was described by Langevin equations with hydrodynamic mobility matrices. We find that as long as the interaction energies are weak, the assembly kinetics can be described well by coagulation-fragmentation equations in the reaction-limited approximation. By contrast, larger interaction energies lead to kinetic trapping and diffusion-limited assembly. We find that the selection of nine-fold symmetry requires a small value for the angular interaction range. These predictions are confirmed by the experimentally observed reaction constant and angle fluctuations. Overall, our simulations suggest that the SAS-6 system works at the crossover between a relatively weak binding energy that avoids kinetic trapping and a small angular range that favors the nine-fold symmetry.

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Type
research article
DOI
10.1063/5.0135349
Web of Science ID

WOS:000937824600019

Author(s)
Melo, Santiago Gomez
Woerthmueller, Dennis
Gonczy, Pierre  
Banterle, Niccolo  
Schwarz, Ulrich S.
Date Issued

2023-02-28

Publisher

AIP Publishing

Published in
Journal Of Chemical Physics
Volume

158

Issue

8

Article Number

085102

Subjects

Chemistry, Physical

•

Physics, Atomic, Molecular & Chemical

•

Chemistry

•

Physics

•

centriole

•

models

•

macromolecules

•

organization

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
UPGON  
Available on Infoscience
April 10, 2023
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/196810
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