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research article

Pushing the Frontiers of First-Principles Based Computer Simulations of Chemical and Biological Systems

Brunk, Elizabeth  
•
Ashari, Negar  
•
Athri, Prashanth
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2011
CHIMIA

The Laboratory of Computational Chemistry and Biochemistry is active in the development and application of first-principles based simulations of complex chemical and biochemical phenomena. Here, we review some of our recent efforts in extending these methods to larger systems, longer time scales and increased accuracies. Their versatility is illustrated with a diverse range of applications, ranging from the determination of the gas phase structure of the cyclic decapeptide gramicidin S, to the study of G protein coupled receptors, the interaction of transition metal based anti-cancer agents with protein targets, the mechanism of action of DNA repair enzymes, the role of metal ions in neurodegenerative diseases and the computational design of dye-sensitized solar cells. Many of these projects are done in collaboration with experimental groups from the Institute of Chemical Sciences and Engineering (ISIC) at the EPFL.

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Type
research article
DOI
10.2533/chimia.2011.667
Web of Science ID

WOS:000295811300010

Author(s)
Brunk, Elizabeth  
Ashari, Negar  
Athri, Prashanth
Campomanes, Pablo  
de Carvalho, F. Franco
Curchod, Basile F. E.  
Diamantis, Polydefkis  
Doemer, Manuel  
Garrec, Julian  
Laktionov, Andrey  
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Date Issued

2011

Published in
CHIMIA
Volume

65

Start page

667

End page

671

Subjects

Anti-cancer

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DNA repair

•

Excited states

•

First-principles molecular dynamics

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Force matching

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Gpcr

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Gramicidin

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Nonadiabatic dynamics

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Prion

•

QM/MM simulations

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Solar cells

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Time-dependent density functional theory

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Density-Functional Theory

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Molecular-Dynamics Simulations

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Protein-Coupled Receptor

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Alzheimers-Disease

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Qm/Mm Simulations

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Gramicidin-S

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Repair

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Dna

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Biomolecules

•

Complexes

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LCBC  
Available on Infoscience
November 7, 2011
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/72341
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