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review article

Sequence-dependent structural properties of B-DNA: what have we learned in 40 years?

da Rosa, Gabriela
•
Grille, Leandro
•
Calzada, Victoria
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December 1, 2021
Biophysical Reviews

The structure of B-DNA, the physiological form of the DNA molecule, has been a central topic in biology, chemistry and physics. Far from uniform and rigid, the double helix was revealed as a flexible and structurally polymorphic molecule. Conformational changes that lead to local and global changes in the helix geometry are mediated by a complex choreography of base and backbone rearrangements affecting the ability of the B-DNA to recognize ligands and consequently on its functionality. In this sense, the knowledge obtained from the sequence-dependent structural properties of B-DNA has always been thought crucial to rationalize how ligands and, most notably, proteins recognize B-DNA and modulate its activity, i.e. the structural basis of gene regulation. Honouring the anniversary of the first high-resolution X-ray structure of a B-DNA molecule, in this contribution, we present the most important discoveries of the last 40 years on the sequence-dependent structural and dynamical properties of B-DNA, from the early beginnings to the current frontiers in the field.

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Type
review article
DOI
10.1007/s12551-021-00893-8
Web of Science ID

WOS:001074281400036

Author(s)
da Rosa, Gabriela
Grille, Leandro
Calzada, Victoria
Ahmad, Katya
Arcon, Juan Pablo
Battistini, Federica
Bayarri, Genis
Bishop, Thomas
Carloni, Paolo
Cheatham Iii, Thomas
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Date Issued

2021-12-01

Publisher

Springernature

Published in
Biophysical Reviews
Volume

13

Issue

6

Start page

995

End page

1005

Subjects

Life Sciences & Biomedicine

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Structural Polymorphisms

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Helical Parameters

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Drew-Dickerson Dodecamer

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Ascona B-Dna Consortium

•

Nearest Neighbours

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LCVMM  
FunderGrant Number

The authors want to express their gratitude to the International Union for Pure and Applied Biophysics (IUPAB) for the invitation to write this review and to Prof. Daniel Peluffo (UdelaR, UY) for suggesting our names to the IUPAB council.

Available on Infoscience
February 16, 2024
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/203829
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