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research article

Genome-wide mapping of Myc binding and gene regulation in serum-stimulated fibroblasts

Perna, D.
•
Faga, G.
•
Verrecchia, A.
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2012
Oncogene

The transition from quiescence to proliferation is a key regulatory step that can be induced by serum stimulation in cultured fibroblasts. The transcription factor Myc is directly induced by serum mitogens and drives a secondary gene expression program that remains largely unknown. Using mRNA profiling, we identify close to 300 Myc-dependent serum response (MDSR) genes, which are induced by serum in a Myc-dependent manner in mouse fibroblasts. Mapping of genomic Myc-binding sites by ChIP-seq technology revealed that most MDSR genes were directly targeted by Myc, but represented a minor fraction (5.5%) of all Myc-bound promoters (which were 22.4% of all promoters). Other target loci were either induced by serum in a Myc-independent manner, were not significantly regulated or were negatively regulated. MDSR gene products were involved in a variety of processes, including nucleotide biosynthesis, ribosome biogenesis, DNA replication and RNA control. Of the 29 MDSR genes targeted by RNA interference, three showed a requirement for cell-cycle entry upon serum stimulation and 11 for long-term proliferation and/or survival. Hence, proper coordination of key regulatory and biosynthetic pathways following mitogenic stimulation relies upon the concerted regulation of multiple Myc-dependent genes. Oncogene (2012) 31, 1695-1709; doi:10.1038/onc.2011.359; published online 22 August 2011

  • Details
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Type
research article
DOI
10.1038/onc.2011.359
Web of Science ID

WOS:000302231400008

Author(s)
Perna, D.
Faga, G.
Verrecchia, A.
Gorski, M. M.
Barozzi, I.
Narang, V.
Khng, J.
Lim, K. C.
Sung, W.-K.
Sanges, R.
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Date Issued

2012

Published in
Oncogene
Volume

31

Issue

13

Start page

1695

End page

1709

Subjects

Myc

•

chromatin

•

transcription

•

serum

•

Embryonic Stem-Cells

•

C-Myc

•

Transcription Factor

•

In-Vivo

•

Chromatin-Structure

•

Cycle Progression

•

Protein-Synthesis

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Dna-Replication

•

Nuclear Import

•

Rna Exosome

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
UPTRU  
Available on Infoscience
April 26, 2012
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/79696
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