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  4. RibSeg v2: A Large-Scale Benchmark for Rib Labeling and Anatomical Centerline Extraction
 
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research article

RibSeg v2: A Large-Scale Benchmark for Rib Labeling and Anatomical Centerline Extraction

Jin, Liang
•
Gu, Shixuan
•
Wei, Donglai
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January 1, 2024
Ieee Transactions On Medical Imaging

Automatic rib labeling and anatomical centerline extraction are common prerequisites for various clinical applications. Prior studies either use in-house datasets that are inaccessible to communities, or focus on rib segmentation that neglects the clinical significance of rib labeling. To address these issues, we extend our prior dataset (RibSeg) on the binary rib segmentation task to a comprehensive benchmark, named RibSeg v2, with 660 CT scans (15,466 individual ribs in total) and annotations manually inspected by experts for rib labeling and anatomical centerline extraction. Based on the RibSeg v2, we develop a pipeline including deep learning-based methods for rib labeling, and a skeletonization-based method for centerline extraction. To improve computational efficiency, we propose a sparse point cloud representation of CT scans and compare it with standard dense voxel grids. Moreover, we design and analyze evaluation metrics to address the key challenges of each task. Our dataset, code, and model are available online to facilitate open research at https://github.com/M3DV/RibSeg.

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Type
research article
DOI
10.1109/TMI.2023.3313627
Web of Science ID

WOS:001158081600045

Author(s)
Jin, Liang
•
Gu, Shixuan
•
Wei, Donglai
•
Adhinarta, Jason Ken
•
Kuang, Kaiming
•
Zhang, Yongjie Jessica
•
Pfister, Hanspeter
•
Ni, Bingbing
•
Yang, Jiancheng  
•
Li, Ming
Date Issued

2024-01-01

Publisher

Ieee-Inst Electrical Electronics Engineers Inc

Published in
Ieee Transactions On Medical Imaging
Volume

43

Issue

1

Start page

570

End page

581

Subjects

Technology

•

Life Sciences & Biomedicine

•

Rib Segmentation

•

Rib Labeling

•

Rib Centerline

•

Point Cloud

•

Computed Tomography

Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
CVLAB  
FunderGrant Number

Science and Technology Planning Project of Shanghai Science and Technology Commission

Available on Infoscience
March 18, 2024
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/206350
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