Repository logo

Infoscience

  • English
  • French
Log In
Logo EPFL, École polytechnique fédérale de Lausanne

Infoscience

  • English
  • French
Log In
  1. Home
  2. Academic and Research Output
  3. Conferences, Workshops, Symposiums, and Seminars
  4. Stochastic phase oscillators and circadian bioluminescence recordings
 
conference paper

Stochastic phase oscillators and circadian bioluminescence recordings

Rougemont, J.
•
Naef, F.  
2007
Cold Spring Harbor Symposia On Quantitative Biology
72nd Cold Spring Harbor Symposium on Quantitative Biology

Cultured circadian oscillators from peripheral tissues were recently shown to be both cell-autonomous and self-sustained. Therefore, the dominant cause for amplitude reduction observed in bioluminescence recordings of cultured fibroblasts is desynchronization, rather than the damping of individual oscillators. Here, we review a generic model for quantifying luminescence signals from biochemical oscillators, based on noisy-phase oscillators. Our model incorporates three essential features of circadian clocks: the stability of the limit cycle, fluctuations, and intercellular coupling. The model is then used to analyze bioluminescence recordings from immortalized and primary fibroblasts. Fits to population recordings allow simultaneous estimation of the stability of the limit cycle (or equivalently, the stiffness of individual frequencies), the period dispersion, and the interaction strength between cells. Consistent with other work, coupling is found to be weak and insufficient to synchronize cells. Interestingly, we find that frequency fluctuations remain correlated for longer periods than one clock cycle, which is confirmed from individual cell recordings. We discuss briefly how to link the generic model with more microscopic models, which suggests mechanisms by which circadian oscillators resist fluctuations and maintain accurate timing in the periphery.

  • Details
  • Metrics
Type
conference paper
Web of Science ID

WOS:000257193300044

Author(s)
Rougemont, J.
Naef, F.  
Date Issued

2007

Published in
Cold Spring Harbor Symposia On Quantitative Biology
Volume

72

Start page

405

End page

411

Subjects

Gene-Expression

•

Individual Fibroblasts

•

Reveals Persistent

•

Biological Rhythms

•

Clock Cells

•

Model

•

Time

•

Synchronization

•

Robustness

•

Mechanisms

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
UPNAE  
Event nameEvent placeEvent date
72nd Cold Spring Harbor Symposium on Quantitative Biology

Cold Spring Harbor, NY

May 30, 2007

Available on Infoscience
July 4, 2012
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/83473
Logo EPFL, École polytechnique fédérale de Lausanne
  • Contact
  • infoscience@epfl.ch

  • Follow us on Facebook
  • Follow us on Instagram
  • Follow us on LinkedIn
  • Follow us on X
  • Follow us on Youtube
AccessibilityLegal noticePrivacy policyCookie settingsEnd User AgreementGet helpFeedback

Infoscience is a service managed and provided by the Library and IT Services of EPFL. © EPFL, tous droits réservés