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  4. Strategic redesign of the central metabolism in Pseudomonas putida boosts NADPH generation and product formation
 
preprint

Strategic redesign of the central metabolism in Pseudomonas putida boosts NADPH generation and product formation

Kranenburg, Richard van
•
Martin-Pascual, Maria
•
Kral, Stijn
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June 18, 2025

Abstract

The biotechnological synthesis of chemicals presents a greener and more sustainable alternative to traditional petrochemical processes. However, achieving titers, rates, and yields (TRY) allowing for economic competitiveness remains a significant challenge. A promising strategy to address this bottleneck is the increase of intracellular NADPH levels, a crucial reducing cofactor essential for the biosynthesis of numerous compounds. Here, we have engineered Pseudomonas putida with enhanced NADPH levels by redirecting flux towards the Pentose Phosphate pathway, introducing a phosphoketolase shunt and overexpressing key NADPH-generating enzymes. This strategy resulted in strains with enhanced NADPH pools, increasing TRY levels of the NADPH-dependent biosynthesis of furan dicarboxylic acid (FDCA) and violacein. Furthermore, we address the growth deficiencies typically associated with cofactor level alterations by integrating gntZ, rpe, and xfpk into the genome of P. putida ΔgcdΔeddΔhexR. This genomic integration, coupled to optimal ribosome binding site (RBS) sequences selected from a library, ensures stable gene expression and optimal growth rates without the need for plasmid maintenance. Lastly, we assessed the FDCA production using 1-L bioreactors, demonstrating the superior capabilities of the engineered strains in batch and fed-batch conditions. This strategic redesign of the central metabolism has yielded an NADPH-enhanced P. putida strains with improved product formation and a robust defense against oxidative stress.

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Type
preprint
DOI
10.21203/rs.3.rs-6821618/v1
Author(s)
Kranenburg, Richard van

Wageningen University & Research

Martin-Pascual, Maria

Wageningen University & Research

Kral, Stijn

Wageningen University & Research

Garcia-Martinez, Adrian

Wageningen University & Research

Meulen, Foppe van der

Wageningen University & Research

Temming, Lisanne

Wageningen University & Research

Mullink, Jordy

Wageningen University & Research

Bruinsma, Lyon

Wageningen University & Research

Moreno-Paz, Sara

Wageningen University & Research

Batianis, Christos

Wageningen University & Research

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Date Issued

2025-06-18

Publisher

Springer Science and Business Media LLC

Written at

OTHER

EPFL units
Non-EPFL  
Available on Infoscience
July 10, 2025
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/252094
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