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  4. Generating High Fidelity Surface Meshes of Neocortical Neurons using Skin Modifiers
 
conference paper

Generating High Fidelity Surface Meshes of Neocortical Neurons using Skin Modifiers

Abdellah, Marwan
•
Favreau, Cyrille
•
Hernando, Juan
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2019
Computer Graphics and Visual Computing (CGVC)
Eurographics Proceedings UK Computer Graphics & Visual Computing

We present the results of exploring the capabilities of skinning modifiers to generate high fidelity polygonal surface meshes of neurons from their morphological skeletons that are segmented from optical microscopy slides. Our algorithm is implemented in Blender as an add-on relying on its standard Python API. The implementation is also integrated into an open source domain specific framework, NeuroMorphoVis, that is used to visualize and analyze neuronal morphologies available from the neuroscientific community. Our technique is applied to create meshes for a set of neurons with 55 different morphologies reconstructed from the neocortex of a 14-days-old rat. The generated meshes are used to visualize full compartmental simulations of neocortical activity for analysis purposes and also to create high quality scientific illustrations of in silico neuronal circuits for media production with physically-based path tracers. Computer Graphics and Visual Computing (CGVC) Virtual Reality 45 53 Marwan Abdellah, Cyrille Favreau, Juan Hernando, Samuel Lapere, and Felix Schürmann

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Type
conference paper
DOI
10.2312/cgvc.20191257
Author(s)
Abdellah, Marwan
Favreau, Cyrille
Hernando, Juan
Lapere, Samuel
Schürmann, Felix  
Date Issued

2019

Published in
Computer Graphics and Visual Computing (CGVC)
ISBN of the book

978-3-038680-96-3

Start page

45

End page

53

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
BBP-CORE  
Event nameEvent placeEvent date
Eurographics Proceedings UK Computer Graphics & Visual Computing

Bangor University, United Kingdom

September 12-13, 2019

Available on Infoscience
May 8, 2023
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/197536
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