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research article

Analysis and visualization of cell movement in the developing zebrafish brain

Langenberg, T.
•
Dracz, T.
•
Oates, A. C.  
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2006
Developmental Dynamics

Detailed reconstruction of the spatiotemporal history of embryonic cells is key to understanding tissue formation processes but is often complicated by the large number of cells involved, particularly so in vertebrates. Through a combination of high-resolution time-lapse lineage tracing and antibody staining, we have analyzed the movement of mesencephalic and metencephalic cell populations in the early zebrafish embryo. To facilitate the analysis of our cell tracking data, we have created TracePilot, a software tool that allows interactive manipulation and visualization of tracking data. We demonstrate its utility by showing novel visualizations of cell movement in the developing zebrafish brain. TracePilot (http://www.mpi-cbg.de/tracepilot) is Java-based, available free of charge, and has a program structure that allows the incorporation of additional analysis tools. © 2006 Wiley-Liss, Inc.

  • Details
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Type
research article
DOI
10.1002/dvdy.20692
Scopus ID

2-s2.0-33645462771

Author(s)
Langenberg, T.
Dracz, T.
Oates, A. C.  
Heisenberg, C.-P.
Brand, M.
Date Issued

2006

Published in
Developmental Dynamics
Volume

235

Issue

4

Start page

928

End page

933

Subjects

Animalia

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Animals

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animal tissue

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antibody

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Article

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brain development

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brain region

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Cell Lineage

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cell motion

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Cell Movement

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cell population

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Computer graphics

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Computer program

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Danio rerio

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Data Interpretation

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embryo

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embryo development

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imaging system

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mesencephalon

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Metencephalon

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Microscopy

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nonhuman

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Nonmammalian

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priority journal

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rhombencephalon

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Software

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Statistical

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Time Factors

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Vertebrata

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Video

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zebra fish

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zebrafish

Editorial or Peer reviewed

REVIEWED

Written at

OTHER

EPFL units
UPOATES  
Available on Infoscience
May 30, 2017
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/137784
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