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  4. Visualization, Interactive Handling and Simulation of Molecules in Commodity Augmented Reality in Web Browsers Using moleculARweb's Virtual Modeling Kits
 
research article

Visualization, Interactive Handling and Simulation of Molecules in Commodity Augmented Reality in Web Browsers Using moleculARweb's Virtual Modeling Kits

Rodriguez, Fabio Cortes  
•
Krapp, Lucien F.
•
Dal Peraro, Matteo  
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February 1, 2022
Chimia

moleculARweb (https://molecularweb.epfl.ch) began as a website for education and outreach in chemistry and structural biology through augmented reality (AR) content that runs in the web browsers of regular devices like smartphones, tablets, and computers. Here we present two evolutions of moleculARweb's Virtual Modeling Kits (VMK), tools where users can build and view molecules, and explore their mechanics, in 3D AR by handling the molecules in full 3D with custom-printed cube markers (VMK 2.0) or by moving around a simulated scene with mouse or touch gestures (VMK 3.0). Upon simulation the molecules experience visually realistic torsions, clashes, and hydrogen-bonding interactions that the user can manually switch on and off to explore their effects. Moreover, by manually tuning a fictitious temperature the users can accelerate conformational transitions or 'freeze' specific conformations for careful inspection in 3D. Even some phase transitions and separations can be simulated. We showcase here these and other features of the new VMKs connecting them to possible specific applications to teaching and self-learning of concepts from general, organic, biological, and physical chemistry; and in assisting with small tasks in molecular modelling for research. Last, in a short discussion section we overview what future developments are needed for the 'dream tool' for the future of chemistry education and work.

  • Details
  • Metrics
Type
research article
DOI
10.2533/chimia.2022.145
Web of Science ID

WOS:000779781700019

Author(s)
Rodriguez, Fabio Cortes  
Krapp, Lucien F.
Dal Peraro, Matteo  
Abriata, Luciano A.
Date Issued

2022-02-01

Publisher

SWISS CHEMICAL SOC

Published in
Chimia
Volume

76

Issue

1-2

Start page

145

End page

150

Subjects

Chemistry, Multidisciplinary

•

Chemistry

•

augmented reality

•

chemistry education

•

molecular graphics

•

molecular modelling

•

molecular simulations

•

web programming

•

webxr

•

classroom

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
UPDALPE  
Available on Infoscience
April 25, 2022
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/187286
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