Evolution is foundational to understanding biology, yet learners at all stages have incomplete and incorrect ideas that persist beyond graduation. Contextual features of prompts (e.g., taxon of organism, acquisition vs. loss of traits, etc.) have been shown to influence both the learning process and the ideas students express in explanations of evolutionary processes. In this study, we compare students' explanations of natural selection for humans versus a nonhuman animal (cheetah) at different times during biology instruction. We found "taxon" to be a significant predictor of the content of students' explanations. Responses to "cheetah" prompts contained a larger number and diversity of key concepts (e.g., variation, heritability, differential reproduction) and fewer naive ideas (e.g., need, adapt) when compared with responses to an isomorphic prompt containing "human" as the organism. Overall, instruction increased the prevalence of key concepts, reduced naive ideas, and caused a modest reduction in differences due to taxon. Our findings suggest that the students are reasoning differently about evolutionary processes in humans as compared with nonhuman animals, and that targeted instruction may both increase students' facility with key concepts while reducing their susceptibility to contextual influences.