SPar-K: a method to partition NGS signal data

We present SPar-K (Signal Partitioning with K-means), a method to search for archetypical chromatin architectures by partitioning a set of genomic regions characterized by chromatin signal profiles around ChIP-seq peaks and other kinds of functional sites. This method efficiently deals with problems of data heterogeneity, limited misalignment of anchor points and unknown orientation of asymmetric patterns.


Published in:
Bioinformatics, 35, 21, 4440-4441
Year:
Nov 01 2019
Publisher:
Oxford, OXFORD UNIV PRESS
ISSN:
1367-4803
1460-2059
Laboratories:




 Record created 2019-12-12, last modified 2019-12-12


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