000207384 001__ 207384
000207384 005__ 20190317000142.0
000207384 0247_ $$2doi$$a10.1093/nar/gku1111
000207384 022__ $$a0305-1048
000207384 02470 $$2ISI$$a000350210400015
000207384 02470 $$2PMID$$a25378343
000207384 037__ $$aARTICLE
000207384 245__ $$aThe Eukaryotic Promoter Database: expansion of EPDnew and new promoter analysis tools
000207384 269__ $$a2015
000207384 260__ $$bOxford University Press$$c2015$$aOxford
000207384 300__ $$a5
000207384 336__ $$aJournal Articles
000207384 520__ $$aWe present an update of EPDNew (http://epd. vital-it. ch), a recently introduced new part of the Eukaryotic Promoter Database (EPD) which has been described in more detail in a previous NAR Database Issue. EPD is an old database of experimentally characterized eukaryotic POL II promoters, which are conceptually defined as transcription initiation sites or regions. EPDnew is a collection of automatically compiled, organism-specific promoter lists complementing the old corpus of manually compiled promoter entries of EPD. This new part is exclusively derived from next generation sequencing data from highthroughput promoter mapping experiments. We report on the recent growth of EPDnew, its extension to additional model organisms and its improved integration with other bioinformatics resources developed by our group, in particular the Signal Search Analysis and ChIP-Seq web servers.
000207384 700__ $$uSwiss Inst Bioinformat, CH-1015 Lausanne, Switzerland$$aDreos, Ren
000207384 700__ $$0243605$$g176602$$uSwiss Inst Bioinformat, CH-1015 Lausanne, Switzerland$$aAmbrosini, Giovanna
000207384 700__ $$aPerier, Rouayda Cavin
000207384 700__ $$uSwiss Inst Bioinformat, CH-1015 Lausanne, Switzerland$$aBucher, Philipp$$g113607$$0244404
000207384 773__ $$j43$$tNucleic Acids Research$$kD1$$qD92-D96
000207384 8564_ $$uhttps://infoscience.epfl.ch/record/207384/files/Nucl.%20Acids%20Res.-2015-Dreos-D92-6.pdf$$zPublisher's version$$s997366$$yPublisher's version
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000207384 937__ $$aEPFL-ARTICLE-207384
000207384 973__ $$rREVIEWED$$sPUBLISHED$$aEPFL
000207384 980__ $$aARTICLE