000154708 001__ 154708
000154708 005__ 20190617180046.0
000154708 0247_ $$2doi$$a10.1093/bioinformatics/bti435
000154708 022__ $$a1367-4803
000154708 037__ $$aARTICLE
000154708 245__ $$aRapid and selective surveillance of Arabidopsis thaliana genome annotations with Centrifuge
000154708 260__ $$c2005$$bOxford University Press
000154708 269__ $$a2005
000154708 336__ $$aJournal Articles
000154708 500__ $$aNational Licences
000154708 520__ $$aCentrifuge is a user-friendly system to simultaneously access Arabidopsis gene annotations and intra- and inter-organism sequence comparison data. The tool allows rapid retrieval of user-selected data for each annotated Arabidopsis gene providing, in any combination, data on the following features: predicted protein properties such as mass, pI, cellular location and transmembrane domains; SWISS-PROT annotations; Interpro domains; Gene Ontology records; verified transcription; BLAST matches to the proteomes of A.thaliana, Oryza sativa (rice), Caenorhabditis elegans, Drosophila melanogaster and Homo sapiens. The tool lends itself particularly well to the rapid analysis of contigs or of tens or hundreds of genes identified by high-throughput gene expression experiments. In these cases, a summary table of principal predicted protein features for all genes is given followed by more detailed reports for each individual gene. Centrifuge can also be used for single gene analysis or in a word search mode. AVAILABILITY: http://centrifuge.unil.ch/ CONTACT: edward.farmer@unil.ch.
000154708 6531_ $$aSoftware
000154708 6531_ $$aUser-Computer Interface
000154708 700__ $$aArmand, Florence
000154708 700__ $$0244404$$g113607$$aBucher, Philipp
000154708 700__ $$aJongeneel, C. Victor
000154708 700__ $$aFarmer, Edward E.
000154708 773__ $$j21$$tBioinformatics (Oxford, England)$$k12$$q2906-8
000154708 8564_ $$uhttps://infoscience.epfl.ch/record/154708/files/bti435.pdf$$zPUBLISHER'S VERSION$$s138209
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000154708 937__ $$aEPFL-ARTICLE-154708
000154708 973__ $$rREVIEWED$$sPUBLISHED$$aEPFL
000154708 980__ $$aARTICLE