The InterPro Database, 2003 brings increased coverage and new features
Mulder, N. J.; Apweiler, R.; Attwood, T. K.; Bairoch, A.; Barrell, D.; Bateman, A.; Binns, D.; Biswas, M.; Bradley, P.; Bork, P.; Bucher, P.; Copley, R. R.; Courcelle, E.; Das, U.; Durbin, R.; Falquet, L.; Fleischmann, W.; Griffiths-Jones, S.; Haft, D.; Harte, N.; Hulo, N.; Kahn, D.; Kanapin, A.; Krestyaninova, M.; Lopez, R.; Letunic, I.; Lonsdale, D.; Silventoinen, V.; Orchard, S. E.; Pagni, M.; Peyruc, D.; Ponting, C. P.; Selengut, J. D.; Servant, F.; Sigrist, C. J.; Vaughan, R.; Zdobnov, E. M.
2003

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Résumé

InterPro, an integrated documentation resource of protein families, domains and functional sites, was created in 1999 as a means of amalgamating the major protein signature databases into one comprehensive resource. PROSITE, Pfam, PRINTS, ProDom, SMART and TIGRFAMs have been manually integrated and curated and are available in InterPro for text- and sequence-based searching. The results are provided in a single format that rationalises the results that would be obtained by searching the member databases individually. The latest release of InterPro contains 5629 entries describing 4280 families, 1239 domains, 95 repeats and 15 post-translational modifications. Currently, the combined signatures in InterPro cover more than 74% of all proteins in SWISS-PROT and TrEMBL, an increase of nearly 15% since the inception of InterPro. New features of the database include improved searching capabilities and enhanced graphical user interfaces for visualisation of the data. The database is available via a webserver (http://www.ebi.ac.uk/interpro) and anonymous FTP (ftp://ftp.ebi.ac.uk/pub/databases/interpro).

Détails

Titre The InterPro Database, 2003 brings increased coverage and new features
Auteur(s) Mulder, N. J. ; Apweiler, R. ; Attwood, T. K. ; Bairoch, A. ; Barrell, D. ; Bateman, A. ; Binns, D. ; Biswas, M. ; Bradley, P. ; Bork, P. ; Bucher, P. ; Copley, R. R. ; Courcelle, E. ; Das, U. ; Durbin, R. ; Falquet, L. ; Fleischmann, W. ; Griffiths-Jones, S. ; Haft, D. ; Harte, N. ; Hulo, N. ; Kahn, D. ; Kanapin, A. ; Krestyaninova, M. ; Lopez, R. ; Letunic, I. ; Lonsdale, D. ; Silventoinen, V. ; Orchard, S. E. ; Pagni, M. ; Peyruc, D. ; Ponting, C. P. ; Selengut, J. D. ; Servant, F. ; Sigrist, C. J. ; Vaughan, R. ; Zdobnov, E. M.
Publié dans Nucleic Acids Res
Volume 31
Numéro 1
Pages 315-8
Date 2003
Note EMBL Outstation-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK. mulder@ebi.ac.uk
DOI https://doi.org/10.1093/nar/gkg046
Laboratoires GR-BUCHER
Le document apparaît dans Production scientifique et compétences > SV - Faculté des sciences de la vie > ISREC - Institut suisse de recherche expérimentale sur le cancer > GR-BUCHER - Groupe Bucher
Publications validées par des pairs
Travail hors EPFL
Articles de journaux
Publié
Date de création de la notice 2007-12-17

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