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  4. The restricted metabolism of the obligate organohalide respiring bacterium Dehalobacter restrictus: lessons from tiered functional genomics
 
research article

The restricted metabolism of the obligate organohalide respiring bacterium Dehalobacter restrictus: lessons from tiered functional genomics

Rupakula, A.  
•
Kruse, T.
•
Boeren, S.
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2013
Philosophical Transactions of the Royal Society B: Biological Sciences

Dehalobacter restrictus strain PER-K23 is an obligate organohalide respiring bacterium, which displays extremely narrow metabolic capabilities. It grows only via coupling energy conservation to anaerobic respiration of tetra- and trichloroethene with hydrogen as sole electron donor. Dehalobacter restrictus represents the paradigmatic member of the genus Dehalobacter, which in recent years has turned out to be a major player in the bioremediation of an increasing number of organohalides, both in situ and in laboratory studies. The recent elucidation of the D. restrictus genome revealed a rather elaborate genome with predicted pathways that were not suspected from its restricted metabolism, such as a complete corrinoid biosynthetic pathway, the Wood–Ljungdahl (WL) pathway for CO2 fixation, abundant transcriptional regulators and several types of hydrogenases. However, one important feature of the genome is the presence of 25 reductive dehalogenase genes, from which so far only one, pceA, has been characterized on genetic and biochemical levels. This study describes a multi-level functional genomics approach on D. restrictus across three different growth phases. A global proteomic analysis allowed consideration of general metabolic pathways relevant to organohalide respiration, whereas the dedicated genomic and transcriptomic analysis focused on the diversity, composition and expression of genes associated with reductive dehalogenases.

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Type
research article
DOI
10.1098/rstb.2012.0325
Author(s)
Rupakula, A.  
Kruse, T.
Boeren, S.
Holliger, C.  
Smidt, H.
Maillard, J.  
Date Issued

2013

Published in
Philosophical Transactions of the Royal Society B: Biological Sciences
Volume

368

Issue

1616

Start page

20120325

End page

20120325

URL

URL

http://rstb.royalsocietypublishing.org/content/368/1616/20120325.short
Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LBE  
Available on Infoscience
March 26, 2013
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/90586
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