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  4. Computational, Structural, and Kinetic Evidence That Vibrio vulnificus FrsA Is Not a Cofactor-Independent Pyruvate Decarboxylase
 
research article

Computational, Structural, and Kinetic Evidence That Vibrio vulnificus FrsA Is Not a Cofactor-Independent Pyruvate Decarboxylase

Kellett, Whitney F.
•
Brunk, Elizabeth  
•
Desai, Bijoy J.
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2013
Biochemistry

The fermentation-respiration switch (FrsA) protein in Vibrio vulnificus was recently reported to catalyze the cofactor-independent decarboxylation of pyruvate. We now report quantum mechanical/molecular mechenical calculations that examine the energetics of C-C bond cleavage for a pyruvate molecule bound within the putative active site of FrsA. These calculations suggest that the barrier to C-C bond cleavage in the bound substrate is 28 kcal/mol, which is similar to that estimated for the uncatalyzed decarboxylation of pyruvate in water at 25 degrees C. In agreement with the theoretical predictions, no pyruvate decarboxylase activity was detected for recombinant FrsA protein that could be crystallized and structurally characterized. These results suggest that the functional annotation of FrsA as a cofactor-independent pyruvate decarboxylase is incorrect.

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Type
research article
DOI
10.1021/bi400093y
Web of Science ID

WOS:000316520000002

Author(s)
Kellett, Whitney F.
Brunk, Elizabeth  
Desai, Bijoy J.
Fedorov, Alexander A.
Almo, Steven C.
Gerlt, John A.
Rothlisberger, Ursula  
Richards, Nigel G. J.
Date Issued

2013

Publisher

Amer Chemical Soc

Published in
Biochemistry
Volume

52

Issue

11

Start page

1842

End page

1844

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LCBC  
Available on Infoscience
April 2, 2013
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/91290
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