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  4. Dissecting the Effects of Concentrated Carbohydrate Solutions on Protein Diffusion, Hydration, and Internal Dynamics
 
research article

Dissecting the Effects of Concentrated Carbohydrate Solutions on Protein Diffusion, Hydration, and Internal Dynamics

Spiga, Enrico  
•
Abriata, Luciano A.
•
Piazza, Francesco
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2014
The Journal of Physical Chemistry B

We present herein a thorough description of the effects of high glucose concentrations on the diffusion, hydration and internal dynamics of ubiquitin, as predicted from extensive molecular dynamics simulations on several systems described at fully atomistic level. We observe that the protein acts as a seed that speeds up the natural propensity of glucose to cluster at high concentration; the sugar molecules thus aggregate around the protein trapping it inside a dynamic cage. This process extensively dehydrates the protein surface, restricts the motions of the remaining water molecules, and drags the large-scale, collective motions of protein atoms slowing down the rate of exploration of the conformational space despite only a slight dampening of fast, local dynamics. We discuss how these effects could be relevant to the function of sugars as preservation agents in biological materials, and how crowding by small sticky molecules could modulate proteins across different reaction coordinates inside the cellular cytosol.

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Type
research article
DOI
10.1021/jp4126705
Web of Science ID

WOS:000336510300003

Author(s)
Spiga, Enrico  
Abriata, Luciano A.
Piazza, Francesco
Dal Peraro, Matteo  
Date Issued

2014

Publisher

Amer Chemical Soc

Published in
The Journal of Physical Chemistry B
Volume

118

Issue

20

Start page

5310

End page

5321

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
UPDALPE  
Available on Infoscience
June 23, 2014
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/104588
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