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review article
The OPEP protein model: from single molecules, amyloid formation, crowding and hydrodynamics to DNA/RNA systems
The OPEP coarse-grained protein model has been applied to a wide range of applications since its first release 15 years ago. The model, which combines energetic and structural accuracy and chemical specificity, allows the study of single protein properties, DNA-RNA complexes, amyloid fibril formation and protein suspensions in a crowded environment. Here we first review the current state of the model and the most exciting applications using advanced conformational sampling methods. We then present the current limitations and a perspective on the ongoing developments.
Type
review article
Web of Science ID
WOS:000337131200025
Authors
Sterpone, Fabio
•
Melchionna, Simone
•
Tuffery, Pierre
•
Pasquali, Samuela
•
Mousseau, Normand
•
Cragnolini, Tristan
•
Chebaro, Yassmine
•
St-Pierre, Jean-Francois
•
Kalimeri, Maria
•
Publication date
2014
Publisher
Published in
Volume
43
Issue
13
Start page
4871
End page
4893
Peer reviewed
REVIEWED
EPFL units
Available on Infoscience
August 29, 2014
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