Advanced momentum transport analysis is used to study matched hydrogen (H) and deuterium (D) plasmas in the core of ASDEX Upgrade. The aim is to validate gyrokinetic theory and assess a possible isotope dependence. The methodology extracts momentum diffusion, convection, and intrinsic torque as a function of time from experiments employing neutral beam injection (NBI) modulation. H and D plasma scenarios with comparable ion heat fluxes, NBI torque, electron densities, and several dimensionless parameters were designed to highlight any mass dependency. Linear gyrokinetic simulations predict that, for similar background gradients, the Prandtl and pinch numbers should be similar for H and D. This was confirmed by the experimental momentum transport analyses. The assessed intrinsic torques were found to be similar between H and D, co-current directed and located near the outermost region of the plasma core. The strength of the intrinsic torque is correlated with the amplitude of the plasma pressure gradient in the pedestal. Finally, a robust error analysis demonstrates the uniqueness of the parameters obtained together with their uncertainties. Neglecting the intrinsic torque, or its time dependence, systematically distorts the assessed momentum diffusion and convection. This is the first method to separate all three transport mechanisms from experimental data by retaining their time dependencies, that is found to match, quantitatively, the gyrokinetic predictions for Prandtl and pinch numbers, within experimental uncertainties.