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research article

Insights, opportunities, and challenges provided by large cell atlases

Hemberg, Martin
•
Marini, Fédérico
•
Ghazanfar, Shila
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October 20, 2025
Genome Biology

The field of single-cell biology is growing rapidly, generating large amounts of data from a variety of species, disease conditions, tissues, and organs. Coordinated efforts such as CZI CELLxGENE, HuBMAP, Broad Institute Single Cell Portal, and DISCO allow researchers to access large volumes of curated datasets, including more than just scRNA-seq data. These resources have created an opportunity to build and expand the computational biology ecosystem to develop tools necessary for data reuse and for extracting novel biological insights. We highlight achievements made so far, areas where further development is needed, and specific challenges that need to be overcome.

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Type
research article
DOI
10.1186/s13059-025-03771-8
Author(s)
Hemberg, Martin

Brigham and Women's Hospital

Marini, Fédérico

University Medical Center of the Johannes Gutenberg University Mainz

Ghazanfar, Shila

The University of Sydney

Al Ajami, Ahmad

Goethe University Frankfurt

Abassi, Najla

University Medical Center of the Johannes Gutenberg University Mainz

Anchang, Benedict

National Institute of Environmental Health Sciences

Benayoun, Bérénice A.

Keck Hospital of USC

Cao, Yue

The University of Sydney

Chen, Ken

The University of Texas MD Anderson Cancer Center

Cuesta-Astroz, Yesid

Instituto Colombiano de Medicina Tropical

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Date Issued

2025-10-20

Publisher

Springer Science and Business Media LLC

Published in
Genome Biology
Volume

26

Issue

1

Article Number

358

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
EPFL  
FunderFunding(s)Grant NumberGrant URL

Chan Zuckerberg Initiative

Available on Infoscience
October 28, 2025
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/255299
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