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research article

A Spatiotemporal Characterization Method for the Dynamic Cytoskeleton

Alhussein, Ghada
•
Shanti, Aya
•
Farhat, Ilyas A. H.
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2016
Cytoskeleton

The significant gap between quantitative and qualitative understanding of cytoskeletal function is a pressing problem; microscopy and labeling techniques have improved qualitative investigations of localized cytoskeleton behavior, whereas quantitative analyses of whole cell cytoskeleton networks remain challenging. Here we present a method that accurately quantifies cytoskeleton dynamics. Our approach digitally subdivides cytoskeleton images using interrogation windows, within which box-counting is used to infer a fractal dimension (D-f) to characterize spatial arrangement, and gray value intensity (GVI) to determine actin density. A partitioning algorithm further obtains cytoskeleton characteristics from the perinuclear, cytosolic, and periphery cellular regions. We validated our measurement approach on Cytochalasin-treated cells using transgenically modified dermal fibroblast cells expressing fluorescent actin cytoskeletons. This method differentiates between normal and chemically disrupted actin networks, and quantifies rates of cytoskeletal degradation. Furthermore, GVI distributions were found to be inversely proportional to D-f, having several biophysical implications for cytoskeleton formation/degradation. We additionally demonstrated detection sensitivity of differences in D-f and GVI for cells seeded on substrates with varying degrees of stiffness, and coated with different attachment proteins. This general approach can be further implemented to gain insights on dynamic growth, disruption, and structure of the cytoskeleton (and other complex biological morphology) due to biological, chemical, or physical stimuli. (C) 2016 Wiley Periodicals, Inc.

  • Details
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Type
research article
DOI
10.1002/cm.21297
Web of Science ID

WOS:000379027300001

Author(s)
Alhussein, Ghada
Shanti, Aya
Farhat, Ilyas A. H.
Timraz, Sara B. H.
Alwahab, Noaf S. A.
Pearson, Yanthe E.
Martin, Matthew N.
Christoforou, Nicolas
Teo, Jeremy C. M.
Date Issued

2016

Publisher

Wiley-Blackwell

Published in
Cytoskeleton
Volume

73

Issue

5

Start page

221

End page

232

Subjects

live-imaging

•

temporal analysis

•

cytoskeleton rearrangement

•

mechanobiology

•

high-throughput analysis

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
SV  
Available on Infoscience
October 18, 2016
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/129987
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