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research article

Shotgun sequencing of the human transcriptome with ORF expressed sequence tags

Dias Neto, E.
•
Correa, R. G.
•
Verjovski-Almeida, S.
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2000
Proceedings Of The National Academy Of Sciences Of The United States Of America (PNAS)

Theoretical considerations predict that amplification of expressed gene transcripts by reverse transcription-PCR using arbitrarily chosen primers will result in the preferential amplification of the central portion of the transcript. Systematic, high-throughput sequencing of such products would result in an expressed sequence tag (EST) database consisting of central, generally coding regions of expressed genes. Such a database would add significant value to existing public EST databases, which consist mostly of sequences derived from the extremities of cDNAs, and facilitate the construction of contigs of transcript sequences. We tested our predictions, creating a database of 10,000 sequences from human breast tumors. The data confirmed the central distribution of the sequences, the significant normalization of the sequence population, the frequent extension of contigs composed of existing human ESTs, and the identification of a series of potentially important homologues of known genes. This approach should make a significant contribution to the early identification of important human genes, the deciphering of the draft human genome sequence currently being compiled, and the shotgun sequencing of the human transcriptome.

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Type
research article
DOI
10.1073/pnas.97.7.3491
Author(s)
Dias Neto, E.
Correa, R. G.
Verjovski-Almeida, S.
Briones, M. R.
Nagai, M. A.
da Silva, W. Jr.
Zago, M. A.
Bordin, S.
Costa, F. F.
Goldman, G. H.
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Date Issued

2000

Publisher

National Academy of Sciences

Published in
Proceedings Of The National Academy Of Sciences Of The United States Of America (PNAS)
Volume

97

Issue

7

Start page

3491

End page

6

Note

Ludwig Institute for Cancer Research, Sao Paulo 01509-010, Brazil.

Editorial or Peer reviewed

REVIEWED

Written at

OTHER

EPFL units
GR-BUCHER  
Available on Infoscience
December 17, 2007
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/15704
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