Repository logo

Infoscience

  • English
  • French
Log In
Logo EPFL, École polytechnique fédérale de Lausanne

Infoscience

  • English
  • French
Log In
  1. Home
  2. Academic and Research Output
  3. Journal articles
  4. A Generalized Mathematical Model To Estimate T- and B-Cell Receptor Diversities Using AmpliCot
 
research article

A Generalized Mathematical Model To Estimate T- and B-Cell Receptor Diversities Using AmpliCot

Baltcheva, Irina  
•
Veel, Ellen
•
Volman, Thomas
Show more
2012
Biophysical Journal

The efficiency of the adaptive immune system is dependent on the diversity of T- and B-cell receptors, which is created by random rearrangement of receptor gene segments. AmpliCot is an experimental technique that allows the measurement of the diversity of the T- and B-cell repertoire. This procedure has the advantage over other cloning and sequencing techniques of being time- and expense-effective. In previous studies, receptor diversity, measured with AmpliCot, has been inferred assuming a second-order kinetics model. The latter implies that the relation between diversity and concentration × time (Cot) values is linear. We show that a more detailed model, involving heteroduplex and transient-duplex formation, leads to significantly better fits of experimental data and to nonlinear diversity-Cot relations. We propose an alternative fitting procedure, which is straightforward to apply and which gives an improved description of the relationship between Cot values and diversity.

  • Files
  • Details
  • Metrics
Loading...
Thumbnail Image
Name

main_1.pdf

Access type

openaccess

Size

671.03 KB

Format

Adobe PDF

Checksum (MD5)

734fa97f7efb484b2eebfafef175b044

Loading...
Thumbnail Image
Name

supplemental.pdf

Access type

openaccess

Size

1.16 MB

Format

Adobe PDF

Checksum (MD5)

ca86b4463ef3fab5622d493eb48f607d

Logo EPFL, École polytechnique fédérale de Lausanne
  • Contact
  • infoscience@epfl.ch

  • Follow us on Facebook
  • Follow us on Instagram
  • Follow us on LinkedIn
  • Follow us on X
  • Follow us on Youtube
AccessibilityLegal noticePrivacy policyCookie settingsEnd User AgreementGet helpFeedback

Infoscience is a service managed and provided by the Library and IT Services of EPFL. © EPFL, tous droits réservés