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  4. Quantification and characterization of uncertainty in metabolic engineering
 
conference paper

Quantification and characterization of uncertainty in metabolic engineering

Hatzimanikatis, Vassily  
•
Birol, Inanc
•
Shi, Jiaxiao
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2003
Abstracts of Papers, 225th ACS National Meeting, New Orleans, LA, United States, March 23-27, 2003

One of the central problems in metabolic engineering deals with the identification of the "rate limiting steps", i.e. enzymes whose activities one should manipulate towards the achievement of a desirable performance. However, uncertainty about the kinetic characteristics of the enzymes involved in the pathway of interest makes such identification almost impossible. On the other hand, extensive research within metabolic engineering has enabled the estn. of intracellular metabolic fluxes. Such information, while it provides significant understanding about the functioning of metabolic pathways and, some times, guidance for metabolic engineering, it does not allow a quant. prediction of the metabolic pathway responses to metabolic engineering actions, such as changes in enzyme activities. We have recently developed a method that overcomes these limitations and allows the identification of metabolic engineering targets for the manipulation of metabolic pathways based on information about the stoichiometry of the pathways and the assocd. values of the metabolic fluxes. The framework employs knowledge about the stoichiometry of biochem. networks and the estd. values of the assocd. metabolic fluxes, modeling concepts from metabolic control anal., computational methods, and nonparametric statistics. We will present and discuss the application of the method to the central carbon pathways in E. coli and S. cerevisiae for the identification of the metabolic engineering strategies (i.e., changes in enzyme activities) with the highest probability of success in optimizing conversion of glucose to ethanol. [on SciFinder (R)]

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Type
conference paper
Author(s)
Hatzimanikatis, Vassily  
Birol, Inanc
Shi, Jiaxiao
Wang, Liqing
Date Issued

2003

Published in
Abstracts of Papers, 225th ACS National Meeting, New Orleans, LA, United States, March 23-27, 2003
Start page

BIOT

End page

169

Note

FIELD Section Title:

Chemical Engineering, CMBL,Northwestern University,Evanston,IL,USA. FIELD URL:

written in English.

Editorial or Peer reviewed

REVIEWED

Written at

OTHER

EPFL units
LCSB  
Available on Infoscience
January 11, 2007
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/238799
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