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research article

High-Dimensional Bayesian Clustering with Variable Selection: The R Package bclust

Nia, Vahid Partovi  
•
Davison, Anthony C.  
2012
Journal Of Statistical Software

The R package bclust is useful for clustering high-dimensional continuous data. The package uses a parametric spike-and-slab Bayesian model to downweight the effect of noise variables and to quantify the importance of each variable in agglomerative clustering. We take advantage of the existence of closed-form marginal distributions to estimate the model hyper-parameters using empirical Bayes, thereby yielding a fully automatic method. We discuss computational problems arising in implementation of the procedure and illustrate the usefulness of the package through examples.

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Type
research article
DOI
10.18637/jss.v047.i05
Web of Science ID

WOS:000303804200001

Author(s)
Nia, Vahid Partovi  
Davison, Anthony C.  
Date Issued

2012

Published in
Journal Of Statistical Software
Volume

47

Start page

1

End page

22

Subjects

agglomerative clustering

•

Bayesian clustering

•

Bayesian variable selection

•

dendrogram

•

hierarchical clustering

•

R

•

spike-and-slab model

•

Geometric Representation

•

Microarray Experiments

•

Expression Data

•

Mixture Model

•

Regression

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
STAT  
Available on Infoscience
June 1, 2012
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/81233
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