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  4. Substrates and Cyclic Peptide Inhibitors of the Oligonucleotide-Activated Sirtuin 7
 
research article

Substrates and Cyclic Peptide Inhibitors of the Oligonucleotide-Activated Sirtuin 7

Bolding, Julie E.
•
Nielsen, Alexander Lund  
•
Jensen, Iben
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November 7, 2023
Angewandte Chemie International Edition

The sirtuins are NAD+-dependent lysine deacylases, comprising seven isoforms (SIRT1-7) in humans, which are involved in the regulation of a plethora of biological processes, including gene expression and metabolism. The sirtuins share a common hydrolytic mechanism but display preferences for different epsilon-N-acyllysine substrates. SIRT7 deacetylates targets in nuclei and nucleoli but remains one of the lesser studied of the seven isoforms, in part due to a lack of chemical tools to specifically probe SIRT7 activity. Here we expressed SIRT7 and, using small-angle X-ray scattering, reveal SIRT7 to be a monomeric enzyme with a low degree of globular flexibility in solution. We developed a fluorogenic assay for investigation of the substrate preferences of SIRT7 and to evaluate compounds that modulate its activity. We report several mechanism-based SIRT7 inhibitors as well as de novo cyclic peptide inhibitors selected from mRNA-display library screening that exhibit selectivity for SIRT7 over other sirtuin isoforms, stabilize SIRT7 in cells, and cause an increase in the acetylation of H3 K18.|Broad screening of the substrate specificity of SIRT7 revealed a strong preference for the cleavage of long-chain acyllysine modifications. The activity was substantially increased in the presence of oligonucleotides or nucleosome particles. Finally, random nonstandard peptide integrated discovery (RaPID) delivered a cyclopeptide with potency in the sub-micromolar range and selectivity for SIRT7, which binds and stabilizes SIRT7 in cells.**+image

  • Details
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Type
research article
DOI
10.1002/anie.202314597
Web of Science ID

WOS:001097714300001

Author(s)
Bolding, Julie E.
Nielsen, Alexander Lund  
Jensen, Iben
Hansen, Tobias N.
Ryberg, Line A.
Jameson, Samuel T.
Harris, Pernille
Peters, Guenther H. J.
Denu, John M.
Rogers, Joseph M.
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Date Issued

2023-11-07

Publisher

Wiley-VCH Verlag GmbH

Published in
Angewandte Chemie International Edition
Volume

62

Issue

49

Article Number

e202314597

Subjects

Physical Sciences

•

Epigenetics

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Histones

•

Posttranslational Modification

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Lysine Acylation

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Mrna Display

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

FunderGrant Number

We thank Drs. Peter Fristrup and Ana Rita Colao (PhD thesis, DTU Chemistry 2017) for early homology modeling work on SIRT7 that is not included in the present manuscript. We thank Jose Moran and Slava Kuznetsov (Denu laboratory) for nucleosome prep

NIH

R35GM149279

Novo Nordisk Foundation

NNF19OC0054441

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Available on Infoscience
February 19, 2024
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/204169
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