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  4. COMMIT: Convex Optimization Modeling for Microstructure Informed Tractography
 
research article

COMMIT: Convex Optimization Modeling for Microstructure Informed Tractography

Daducci, Alessandro  
•
Dal Palú, Alessandro
•
Lemkaddem, Alia  
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2015
IEEE Transactions on Medical Imaging (T-MI)

Tractography is a class of algorithms aiming at in vivo mapping the major neuronal pathways in the white matter from diffusion MRI data. These techniques offer a powerful tool to noninvasively investigate at the macroscopic scale the architecture of the neuronal connections of the brain. However, unfortunately, the reconstructions recovered with existing tractography algorithms are not really quantitative even though diffusion MRI is a quantitative modality by nature. As a matter of fact, several techniques have been proposed in recent years to estimate, at the voxel level, intrinsic microstructural features of the tissue, such as axonal density and diameter, by using multicompartment models. In this article, we present a novel framework to reestablish the link between tractography and tissue microstructure. Starting from an input set of candidate fiber-tracts, which are estimated from the data using standard fiber-tracking techniques, we model the diffusion MRI signal in each voxel of the image as a linear combination of the restricted and hindered contributions generated in every location of the brain by these candidate tracts. Then, we seek for the global weight of each of them, i.e. the effective contribution or volume, such that they globally fit the measured signal at best. We demonstrate that these weights can be easily recovered by solving a global convex optimization problem and using efficient algorithms. The effectiveness of our approach has been evaluated both on a realistic phantom with known ground-truth and in vivo brain data. Results clearly demonstrate the benefits of the proposed formulation, opening new perspectives for a more quantitative and biologically-plausible assessment of the structural connectivity of the brain.

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Type
research article
DOI
10.1109/TMI.2014.2352414
Web of Science ID

WOS:000346975900023

Author(s)
Daducci, Alessandro  
Dal Palú, Alessandro
Lemkaddem, Alia  
Thiran, Jean-Philippe  
Date Issued

2015

Publisher

Institute of Electrical and Electronics Engineers

Published in
IEEE Transactions on Medical Imaging (T-MI)
Volume

34

Issue

1

Start page

246

End page

257

Subjects

Diffusion MRI

•

Global tractography

•

Tissue microstructure

•

Convex optimization

•

LTS5

•

CIBM-SPC

URL

URL

http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6884830

URL

https://github.com/daducci/COMMIT
Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LTS5  
Available on Infoscience
August 21, 2014
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/105960
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