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  4. Sorting signed permutations by inversions in O(nlogn) time
 
conference paper

Sorting signed permutations by inversions in O(nlogn) time

Swenson, K.M.  
•
Rajan, V.
•
Lin, Y.  
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2009
Research in Computational Molecular Biology. RECOMB 2009
13th Int'l Conf. on Research in Comput. Molecular Biol. RECOMB'09

The study of genomic inversions (or reversals) has been a mainstay of computational genomics for nearly 20 years. After the initial breakthrough of Hannenhalli and Pevzner, who gave the first polynomial-time algorithm for sorting signed permutations by inversions, improved algorithms have been designed, culminating with an optimal linear-time algorithm for computing the inversion distance and a subquadratic algorithm for providing a shortest sequence of inversions-also known as sorting by inversions. Remaining open was the question of whether sorting by inversions Could be done in O(n log n) time.

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Type
conference paper
DOI
10.1007/978-3-642-02008-7_28
Web of Science ID

WOS:000266195700028

Author(s)
Swenson, K.M.  
Rajan, V.
Lin, Y.  
Moret, B.M.E.  
Date Issued

2009

Publisher

Springer

Publisher place

Berlin

Published in
Research in Computational Molecular Biology. RECOMB 2009
Series title/Series vol.

Lecture Notes in Computer Science; 5541

Start page

386

End page

399

Subjects

Reversals

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LCBB  
Event nameEvent placeEvent date
13th Int'l Conf. on Research in Comput. Molecular Biol. RECOMB'09

Tucson, AZ, USA

May 18-21, 2009

Available on Infoscience
October 14, 2009
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/43679
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