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research article

Sparse Approximations Of Protein Structure From Noisy Random Projections

Panaretos, Victor M.  
•
Konis, Kjell  
2011
Annals Of Applied Statistics

Single-particle electron microscopy is a modern technique that biophysicists employ to learn the structure of proteins. It yields data that consist of noisy random projections of the protein structure in random directions, with the added complication that the projection angles cannot be observed. In order to reconstruct a three-dimensional model, the projection directions need to be estimated by use of an ad-hoc starting estimate of the unknown particle. In this paper we propose a methodology that does not rely on knowledge of the projection angles, to construct an objective data-dependent low-resolution approximation of the unknown structure that can serve as such a starting estimate. The approach assumes that the protein admits a suitable sparse representation, and employs discrete L-1-regularization (LASSO) as well as notions from shape theory to tackle the peculiar challenges involved in the associated inverse problem. We illustrate the approach by application to the reconstruction of an E. coli protein component called the Klenow fragment.

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Type
research article
DOI
10.1214/11-AOAS479
Web of Science ID

WOS:000300382800015

Author(s)
Panaretos, Victor M.  
Konis, Kjell  
Date Issued

2011

Published in
Annals Of Applied Statistics
Volume

5

Start page

2572

End page

2602

Subjects

Statistical tomography

•

electron microscopy

•

single particles

•

nearly black object

•

Lasso

•

deconvolution

•

Roman surface

•

Positron Emission Tomography

•

Electron Cryomicroscopy

•

Maximum-Likelihood

•

Radon Shape

•

Reconstruction

•

Crystallography

•

Regression

•

Particles

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
SMAT  
Available on Infoscience
June 25, 2012
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/82147
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