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  4. Fast Haar-Wavelet Denoising Of Multidimensional Fluorescence Microscopy Data
 
conference paper

Fast Haar-Wavelet Denoising Of Multidimensional Fluorescence Microscopy Data

Luisier, Florian  
•
Vonesch, Cedric  
•
Blu, Thierry  
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2009
2009 Ieee International Symposium On Biomedical Imaging: From Nano To Macro
IEEE Internaional Symposium on Biomedical Imaging - From Nano to Macro

We propose a novel denoising algorithm to reduce the Poisson noise that is typically dominant in fluorescence microscopy data. To process large datasets at a low computational cost, we use the unnormalized Haar wavelet transform. Thanks to some of its appealing properties, independent unbiased MSE estimates can be derived for each subband. Based on these Poisson unbiased MSE estimates, we then optimize linearly parametrized interscale thresholding. Correlations between adjacent images of the multidimensional data are accounted for through a sliding window approach. Experiments on simulated and real data show that the proposed solution is qualitatively similar to a state-of-the-art multiscale method, while being orders of magnitude faster.

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Type
conference paper
DOI
10.1109/ISBI.2009.5193046
Web of Science ID

WOS:000270678400078

Author(s)
Luisier, Florian  
Vonesch, Cedric  
Blu, Thierry  
Unser, Michael  
Date Issued

2009

Publisher

Ieee Service Center, 445 Hoes Lane, Po Box 1331, Piscataway, Nj 08855-1331 Usa

Published in
2009 Ieee International Symposium On Biomedical Imaging: From Nano To Macro
Start page

310

End page

313

Subjects

Poisson noise

•

Fluorescence

•

Haar Wavelet

•

MSE estimation

•

Poisson Intensity

URL

URL

http://bigwww.epfl.ch/publications/luisier0901.html

URL

http://bigwww.epfl.ch/publications/luisier0901.pdf

URL

http://bigwww.epfl.ch/publications/luisier0901.ps
Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LIB  
Event nameEvent placeEvent date
IEEE Internaional Symposium on Biomedical Imaging - From Nano to Macro

Boston, MA

Jun 28-Jul 01, 2009

Available on Infoscience
November 30, 2010
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/59762
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