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  4. Computational analysis of the interplay between tRNA competitive behavior and decoding type on the modulation of translation elongation rate
 
conference presentation

Computational analysis of the interplay between tRNA competitive behavior and decoding type on the modulation of translation elongation rate

Pinto Vieira, Joana Raquel  
•
Racle, Julien  
•
Hatzimanikatis, Vassily  
2013
ICSB 2013 - 14th International Conference on Systems Biology

There has been much discussion in the literature regarding the determinants of ribosomal decoding speed during the mRNA translation process. Computational results based on mechanistic models for ribosomal kinetics have predicted a major role for near-cognate and non-cognate tRNA binding competitive behavior on translation elongation rate. In contrast, a recent experimental study proposed the difference between Watson-Crick and non-Watson-Crick type of tRNA decoding as the main determinant of translation speed. We model stochastically the translation process using a mechanistic model for ribosomal kinetics that accounts for both competitive tRNA behavior and Watson-Crick and non-Watson-Crick types of decoding. With this framework we identify the relative roles that tRNA binding competition and decoding interaction type play on translation elongation rate, and we explore the conditions that allow for optimal protein synthesis.

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Type
conference presentation
Author(s)
Pinto Vieira, Joana Raquel  
Racle, Julien  
Hatzimanikatis, Vassily  
Date Issued

2013

URL

URL

http://www.icsb2013.dk/images/Media/pdf/icsb2013_programme.pdf
Written at

OTHER

EPFL units
LCSB  
Event nameEvent placeEvent date
ICSB 2013 - 14th International Conference on Systems Biology

Copenhagen, Denmark

August 30th - September 3rd, 2013

Available on Infoscience
November 4, 2014
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/108166
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