Repository logo

Infoscience

  • English
  • French
Log In
Logo EPFL, École polytechnique fédérale de Lausanne

Infoscience

  • English
  • French
Log In
  1. Home
  2. Academic and Research Output
  3. Journal articles
  4. 3-D PSF fitting for fluorescence microscopy: implementation and localization application
 
research article

3-D PSF fitting for fluorescence microscopy: implementation and localization application

Kirshner, H.  
•
Aguet, F.  
•
Sage, D.  
Show more
2013
Journal Of Microscopy

Localization microscopy relies on computationally efficient Gaussian approximations of the point spread function for the calculation of fluorophore positions. Theoretical predictions show that under specific experimental conditions, localization accuracy is significantly improved when the localization is performed using a more realistic model. Here, we show how this can be achieved by considering three-dimensional (3-D) point spread function models for the wide field microscope. We introduce a least-squares point spread function fitting framework that utilizes the Gibson and Lanni model and propose a computationally efficient way for evaluating its derivative functions. We demonstrate the usefulness of the proposed approach with algorithms for particle localization and defocus estimation, both implemented as plugins for ImageJ.

  • Details
  • Metrics
Type
research article
DOI
10.1111/j.1365-2818.2012.03675.x
Web of Science ID

WOS:000313984000003

Author(s)
Kirshner, H.  
Aguet, F.  
Sage, D.  
Unser, M.  
Date Issued

2013

Publisher

Wiley-Blackwell

Published in
Journal Of Microscopy
Volume

249

Issue

1

Start page

13

End page

25

Subjects

Single molecule localization microscopy

•

3-D PSF models

URL

URL

http://bigwww.epfl.ch/publications/kirshner1301.html

URL

http://bigwww.epfl.ch/publications/kirshner1301.pdf

URL

http://bigwww.epfl.ch/publications/kirshner1301.ps
Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LIB  
Available on Infoscience
March 28, 2013
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/90980
Logo EPFL, École polytechnique fédérale de Lausanne
  • Contact
  • infoscience@epfl.ch

  • Follow us on Facebook
  • Follow us on Instagram
  • Follow us on LinkedIn
  • Follow us on X
  • Follow us on Youtube
AccessibilityLegal noticePrivacy policyCookie settingsEnd User AgreementGet helpFeedback

Infoscience is a service managed and provided by the Library and IT Services of EPFL. © EPFL, tous droits réservés