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  4. Functional genomics of corrinoid starvation in the organohalide-respiring bacterium Dehalobacter restrictus strain PER-K23
 
research article

Functional genomics of corrinoid starvation in the organohalide-respiring bacterium Dehalobacter restrictus strain PER-K23

Rupakula, Aamani  
•
Lu, Yue
•
Kruse, Thomas
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2015
Frontiers in Microbiology

De novo comnoid biosynthesis represents one of the most complicated metabolic pathways in nature. Organohalide-respiring bacteria (OHRB) have developed different strategies to deal with their need of corrinoid, as it is an essential cofactor of reductive dehalogenases, the key enzymes in OHR metabolism. In contrast to Dehalococcoides mccartyi, the genome of Dehalobacter restrictus strain PER-K23 contains a complete set of corrinoid biosynthetic genes, of which cbiH appears to be truncated and therefore non-functional, possibly explaining the corrinoid auxotrophy of this obligate OHRB. Comparative genomics within Dehalobacter spp. revealed that one (operon-2) of the five distinct comnoid biosynthesis associated operons present in the genome of D. restnctus appeared to be present only in that particular strain, which encodes multiple members of corrinoid transporters and salvaging enzymes. Operon-2 was highly up-regulated upon corrinoid starvation both at the transcriptional (346-fold) and proteomic level (46-fold on average), in line with the presence of an upstream cobalamin riboswitch. Together, these data highlight the importance of this operon in comnoid homeostasis in D. restnctus and the augmented salvaging strategy this bacterium adopted to cope with the need for this essential cofactor.

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Type
research article
DOI
10.3389/fmicb.2014.00761
Web of Science ID

WOS:000348657700001

Author(s)
Rupakula, Aamani  
Lu, Yue
Kruse, Thomas
Boeren, Sjef
Holliger, Christof  
Smidt, Hauke
Maillard, Julien  
Date Issued

2015

Publisher

Frontiers Media SA

Published in
Frontiers in Microbiology
Volume

5

Start page

751

Subjects

corrinoid biosynthesis

•

organohalide respiration

•

Dehalobacter

•

cobalamin riboswitches

•

functional genomics

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LBE  
Available on Infoscience
February 20, 2015
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/111285
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