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  4. Efficient compressed sensing reconstruction for 3D fluorescence microscopy using OptoMechanical Modulation Tomography (OMMT) with a 1+2D regularization
 
research article

Efficient compressed sensing reconstruction for 3D fluorescence microscopy using OptoMechanical Modulation Tomography (OMMT) with a 1+2D regularization

Marelli, Francois  
•
Liebling, Michael
September 25, 2023
Optics Express

OptoMechanical Modulation Tomography (OMMT) exploits compressed sensing to reconstruct high resolution microscopy volumes from fewer measurement images compared to exhaustive section sampling in conventional light sheet microscopy. Nevertheless, the volumetric reconstruction process is computationally expensive, making it impractically slow to use on large-size images, and prone to generating visual artefacts. Here, we propose a reconstruction approach that uses a 1+2D Total Variation (TV1+2) regularization that does not generate such artefacts and is amenable to efficient implementation using parallel computing. We evaluate our method for accuracy and scaleability on simulated and experimental data. Using a high quality, but computationally expensive, Plug-and-Play (PnP) method that uses the BM4D denoiser as a benchmark, we observe that our approach offers an advantageous trade-off between speed and accuracy. (c) 2023 Optica Publishing Group under the terms of the Optica Open Access Publishing Agreement

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Type
research article
DOI
10.1364/OE.493611
Web of Science ID

WOS:001086291500003

Author(s)
Marelli, Francois  
Liebling, Michael
Date Issued

2023-09-25

Published in
Optics Express
Volume

31

Issue

20

Start page

31718

End page

31733

Subjects

Physical Sciences

•

Light-Sheet Microscopy

•

Plug

•

Noise

•

Deep

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LIDIAP  
FunderGrant Number

Schweizerischer Nationalfonds zur Forderung der Wissenschaftlichen Forschung

200020_179217

Available on Infoscience
February 16, 2024
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/203891
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