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research article

The Demographic History of African Drosophila melanogaster

Kapopoulou, Adamandia  
•
Pfeifer, Susanne P.  
•
Jensen, Jeffrey D.  
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September 1, 2018
Genome Biology And Evolution

As one of the most commonly utilized organisms in the study of local adaptation, an accurate characterization of the demographic history of Drosophila melanogaster remains as an important research question. This owes both to the inherent interest in characterizing the population history of this model organism, as well as to the well-established importance of an accurate null demographic model for increasing power and decreasing false positive rates in genomic scans for positive selection. Although considerable attention has been afforded to this issue in non-African populations, less is known about the demographic history of African populations, including from the ancestral range of the species. While qualitative predictions and hypotheses have previously been forwarded, we here present a quantitative model fitting of the population history characterizing both the ancestral Zambian population range as well as the subsequently colonized west African populations, which themselves served as the source of multiple non-African colonization events. We here report the split time of the West African population at 72 kya, a date corresponding to human migration into this region as well as a period of climatic changes in the African continent. Furthermore, we have estimated population sizes at this split time. These parameter estimates thus represent an important null model for future investigations in to African and non-African D. melanogaster populations alike.

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Type
research article
DOI
10.1093/gbe/evy185
Web of Science ID

WOS:000446102700015

Author(s)
Kapopoulou, Adamandia  
Pfeifer, Susanne P.  
Jensen, Jeffrey D.  
Laurent, Stefan  
Date Issued

2018-09-01

Publisher

OXFORD UNIV PRESS

Published in
Genome Biology And Evolution
Volume

10

Issue

9

Start page

2338

End page

2342

Subjects

Evolutionary Biology

•

Genetics & Heredity

•

Evolutionary Biology

•

Genetics & Heredity

•

demographic inference

•

drosophila melanogaster

•

inversion polymorphisms

•

population-structure

•

european admixture

•

selective sweeps

•

genome nexus

•

inference

•

association

•

scans

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
UPJENSEN  
Available on Infoscience
December 13, 2018
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/152161
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