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  4. MATHICSE Technical Report : Biomembrane modeling with Isogeometric Analysis
 
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MATHICSE Technical Report : Biomembrane modeling with Isogeometric Analysis

Bartezzaghi, Andrea  
•
Dede', Luca  
•
Quarteroni, Alfio  
March 1, 2017

We consider the numerical approximation of lipid biomembranes, including red blood cells, described through the Canham-Helfrich model, according to which the shape minimizes the bending energy under area and volume constraints. Energy minimization is performed via L2- gradient flow of the Canham-Helfrich energy using two Lagrange multipliers to weakly enforce the constraints. This yields a highly nonlinear, high order, time dependent geometric Partial Differential Equation (PDE). We represent the biomembranes as single-patch NURBS closed surfaces. We discretize the geometric PDEs in space with NURBS-based Isogeometric Analysis and in time with Backward Differentiation Formulas. We tackle the nonlinearity in our formulation through a semi-implicit approach by extrapolating, at each time level, the geometric quantities of interest from previous time steps. We report the numerical results of the approximation of the Canham-Helfrich problem on ellipsoids of different aspect ratio, which lead to the classical biconcave shape of lipid vesicles at equilibrium. We show that this framework permits an accurate approximation of the Canham-Helfrich problem, while being computationally efficient.

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Type
working paper
DOI
10.5075/epfl-MATHICSE-267616
Author(s)
Bartezzaghi, Andrea  
•
Dede', Luca  
•
Quarteroni, Alfio  
Corporate authors
MATHICSE-Group
Date Issued

2017-03-01

Publisher

MATHICSE

Subjects

Biomembrane

•

Canham-Helfrich energy

•

Geometric Partial Differential Equation

•

NURBS

•

Isogeometric Analysis

•

Backward Differentiation Formulas

•

Lagrange multipliers

Note

MATHICSE Technical Report Nr. 06.2017

Written at

EPFL

EPFL units
CMCS  
RelationURL/DOI

IsPreviousVersionOf

https://infoscience.epfl.ch/record/266615
Available on Infoscience
June 25, 2019
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/158503
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