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  4. Design and Validation of a Tool for Neurite Tracing and Analysis in Fluorescence Microscopy Images
 
research article

Design and Validation of a Tool for Neurite Tracing and Analysis in Fluorescence Microscopy Images

Meijering, E.
•
Jacob, M.  
•
Sarria, J.-C.F.  
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2004
Cytometry Part A

Background: For the investigation of the molecular mechanisms involved in neurite outgrowth and differentiation, accurate and reproducible segmentation and quantification of neuronal processes are a prerequisite. To facilitate this task, we developed a semiautomatic neurite tracing technique. This article describes the design and validation of the technique. Methods: The technique was compared to fully manual delineation. Four observers repeatedly traced selected neurites in 20 fluorescence microscopy images of cells in culture, using both methods. Accuracy and reproducibility were determined by comparing the tracings to high-resolution reference tracings, using two error measures. Labor intensiveness was measured in numbers of mouse clicks required. The significance of the results was determined by a Student t-test and by analysis of variance. Results: Both methods slightly underestimated the true neurite length, but the differences were not unanimously significant. The average deviation from the true neurite centerline was a factor 2.6 smaller with the developed technique compared to fully manual tracing. Intraobserver variability in the respective measures was reduced by a factor 6.0 and 23.2. Interobserver variability was reduced by a factor 2.4 and 8.8, respectively, and labor intensiveness by a factor 3.3. Conclusions: Providing similar accuracy in measuring neurite length, significantly improved accuracy in neurite centerline extraction, and significantly improved reproducibility and reduced labor intensiveness, the developed technique may replace fully manual tracing methods.

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Type
research article
DOI
10.1002/cyto.a.20022
Web of Science ID

WOS:000220805100008

Author(s)
Meijering, E.
Jacob, M.  
Sarria, J.-C.F.  
Steiner, P.  
Hirling, H.  
Unser, M.  
Date Issued

2004

Publisher

Wiley $ InterScience ^{ ® } $

Published in
Cytometry Part A
Volume

58A

Issue

2

Start page

167

End page

176

Subjects

Neurite Tracing

URL

URL

http://bigwww.epfl.ch/publications/meijering0401.htmlhttp://bigwww.epfl.ch/publications/meijering0401.ps
Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
PTBIOP  
LIB  
Available on Infoscience
November 30, 2005
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/220716
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