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review article

A needed nomenclature for nucleosomes

Keogh, Michael Christopher
•
Almouzni, Genevieve
•
Andrews, Andrew J.
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October 2, 2025
Molecular Cell

Histone post-translational modifications (PTMs) are crucial to eukaryotic genome regulation, with a range of reported functions and mechanisms of action. Though often studied individually, it has long been recognized that the modifications function by combinatorial synergy or antagonism. Interplay may involve PTMs on the same histone, within the same nucleosome (containing a histone octamer), or between nucleosomes in higher-order chromatin. Given this, the field must distinguish ever greater complexity, and the context in which it is studied, with brevity and precision. The proteoform was introduced to define individual forms of a protein by sequence and PTMs, followed by the nucleoform to describe the particular gathering of histones within an individual nucleosome. There is now a need to define specific forms of these entities in prose while providing space for experimental nuance. To this end, we introduce a nomenclature that can express discrete PTMs, proteoforms, nucleoforms, or situations where defined PTMs exist in an uncertain context. Though specifically designed for the chromatin field, adaptions of the framework could be used to describe—and thus dissect—how proteoforms are configured in functionally distinct complexes across biology.

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Type
review article
DOI
10.1016/j.molcel.2025.08.029
Scopus ID

2-s2.0-105017234334

Author(s)
Keogh, Michael Christopher

EpiCypher

Almouzni, Genevieve

Institut Curie

Andrews, Andrew J.

University of North Carolina Wilmington

Armache, Karim Jean

NYU Grossman School of Medicine

Arrowsmith, Cheryl H.

Princess Margaret Cancer Centre

Baek, Sung Hee

School of Biological Sciences

Bedford, Mark T.

The University of Texas MD Anderson Cancer Center

Bernstein, Emily

Icahn School of Medicine at Mount Sinai

Côté, Jacques

CHU de Québec-Université Laval

David, Yael

Memorial Sloan-Kettering Cancer Center

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Date Issued

2025-10-02

Published in
Molecular Cell
Volume

85

Issue

19

Start page

3554

End page

3561

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LCBM  
FunderFunding(s)Grant NumberGrant URL

National Institutes of Health

Available on Infoscience
October 8, 2025
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/254750
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