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  4. Circadian clock-dependent and -independent rhythmic proteomes implement distinct diurnal functions in mouse liver
 
research article

Circadian clock-dependent and -independent rhythmic proteomes implement distinct diurnal functions in mouse liver

Mauvoisin, Daniel
•
Wang, Jingkui  
•
Jouffe, Celine
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2014
Proceedings Of The National Academy Of Sciences Of The United States Of America (PNAS)

Diurnal oscillations of gene expression controlled by the circadian clock underlie rhythmic physiology across most living organisms. Although such rhythms have been extensively studied at the level of transcription and mRNA accumulation, little is known about the accumulation patterns of proteins. Here, we quantified temporal profiles in the murine hepatic proteome under physiological light-dark conditions using stable isotope labeling by amino acids quantitative MS. Our analysis identified over 5,000 proteins, of which several hundred showed robust diurnal oscillations with peak phases enriched in the morning and during the night and related to core hepatic physiological functions. Combined mathematical modeling of temporal protein and mRNA profiles indicated that proteins accumulate with reduced amplitudes and significant delays, consistent with protein half-life data. Moreover, a group comprising about one-half of the rhythmic proteins showed no corresponding rhythmic mRNAs, indicating significant translational or posttranslational diurnal control. Such rhythms were highly enriched in secreted proteins accumulating tightly during the night. Also, these rhythms persisted in clock-deficient animals subjected to rhythmic feeding, suggesting that food-related entrainment signals influence rhythms in circulating plasma factors.

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Type
research article
DOI
10.1073/pnas.1314066111
Web of Science ID

WOS:000329350700057

Author(s)
Mauvoisin, Daniel
Wang, Jingkui  
Jouffe, Celine
Martin, Eva
Atger, Florian
Waridel, Patrice
Quadroni, Manfredo
Gachon, Frederic
Naef, Felix  
Date Issued

2014

Publisher

National Academy of Sciences

Published in
Proceedings Of The National Academy Of Sciences Of The United States Of America (PNAS)
Volume

111

Issue

1

Start page

167

End page

172

Subjects

circadian rhythm

•

proteomics

•

liver metabolism

•

posttranslational regulation

•

protein secretion

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
UPNAE  
Available on Infoscience
February 17, 2014
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/100721
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