Dataset - Kinetic-model-guided engineering of multiple S. cerevisiae strains improves p-coumaric acid production
Dataset supporting the results presented in the paper entitled "Kinetic-model-guided engineering of multiple S. cerevisiae strains improves p-coumaric acid production" by Narayanan, Jiang & Wang et al (https://doi.org/10.1016/j.ymben.2025.06.008).
Dataset contains:
- steady_states.csv
- The set of 5,000 steady state profiles consistent with the strain ST10284 built using pyTFA
- The sample closest to the mean of all the profiles (index 3191) was used for kinetic model construction
- ODE nonlinear runs aimed to verify NOMAD-derived designs.
- Time-series growth data from Saccharomyces cerevisiae cultures measured using the Growth Profiler 960. The values represent green intensity (G-values) from a 24-well plate, recorded every 30 minutes.
The corresponding code can be found at the GitHub repository (https://github.com/EPFL-LCSB/NOMAD/tree/master/ME-p-coumaric-acid)
4192c824-2d41-4123-9f71-7d60a4002c01
University of Cambridge
Technical University of Denmark
Technical University of Denmark
Princeton University
Technical University of Denmark
University Hospital of Lausanne
Technical University of Denmark
Technical University of Denmark
EPFL
2025
2
CC BY
Funder | Funding(s) | Grant NO | Grant URL |
European Commission | Modular cell factories for the production of 100 compounds from the shikimate pathway | 814408 | |
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