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  4. Dataset - Kinetic-model-guided engineering of multiple S. cerevisiae strains improves p-coumaric acid production
 
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Dataset - Kinetic-model-guided engineering of multiple S. cerevisiae strains improves p-coumaric acid production

Narayanan, Bharath  
•
Jiang, Wei  
•
Wang, Shengbao
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2025
Zenodo

Dataset supporting the results presented in the paper entitled "Kinetic-model-guided engineering of multiple S. cerevisiae strains improves p-coumaric acid production" by Narayanan, Jiang & Wang et al (https://doi.org/10.1016/j.ymben.2025.06.008).

Dataset contains:

  1. steady_states.csv
  • The set of 5,000 steady state profiles consistent with the strain ST10284 built using pyTFA
  • The sample closest to the mean of all the profiles (index 3191) was used for kinetic model construction
  1. ODE nonlinear runs aimed to verify NOMAD-derived designs.
  2. Time-series growth data from Saccharomyces cerevisiae cultures measured using the Growth Profiler 960. The values represent green intensity (G-values) from a 24-well plate, recorded every 30 minutes.

The corresponding code can be found at the GitHub repository (https://github.com/EPFL-LCSB/NOMAD/tree/master/ME-p-coumaric-acid)

  • Details
  • Metrics
Type
dataset
DOI
10.5281/zenodo.15721286
ACOUA ID

4192c824-2d41-4123-9f71-7d60a4002c01

Author(s)
Narayanan, Bharath  

University of Cambridge

Jiang, Wei  

Technical University of Denmark

Wang, Shengbao

Technical University of Denmark

Weilandt, Danierl Robert

Princeton University

Saez Saez, Javier  

Technical University of Denmark

Masid, Maria  

University Hospital of Lausanne

Hesselberg-Thomsen, Victor

Technical University of Denmark

Borodina, Irina

Technical University of Denmark

Hatzimanikatis, Vassily  

EPFL

Miskovic, Ljubisa  

EPFL

Date Issued

2025

Version

2

Publisher

Zenodo

License

CC BY

Subjects

Saccharomyces cerevisiae

•

p-coumaric acid

•

large-scale kinetic models of metabolism

•

rational strain design

•

promoter swapping

•

metabolic engineering

•

Metabolic Engineering

•

Metabolic Engineering/methods

•

Metabolism

EPFL units
LCSB  
FunderFunding(s)Grant NOGrant URL

European Commission

Modular cell factories for the production of 100 compounds from the shikimate pathway

814408

RelationRelated workURL/DOI

IsSupplementTo

https://infoscience.epfl.ch/handle/20.500.14299/238821

IsVersionOf

https://doi.org/10.5281/zenodo.15432260
Available on Infoscience
June 25, 2025
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/251536
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