LCVMM - Laboratory for Computation and Visualization in Mathematics and Mechanics
09:11Computation and Visualization in Multiscale Modelling of DNA Mechanics. Thèse EPFL, n° 7062 (2016)
10:07On the statistical physics of chains and rods, with application to multi-scale sequence-dependent DNA modelling. Thèse EPFL, n° 6977 (2016)
12:51Analyzing ion distributions around DNA: sequence-dependence of potassium ion distributions from microsecond molecular dynamics, in Nucleic Acids Research, vol. 43, num. 4, p. 2412-2423, 2015.
14:40mu ABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA, in Nucleic Acids Research, vol. 42, num. 19, p. 12272-12283, 2014.
10:06cgDNA: a software package for the prediction of sequence-dependent coarse-grain free energies of B-form DNA, in Nucleic Acids Research, vol. 42, num. 20, 2014.
08:48Analyzing ion distributions around DNA, in Nucleic Acids Research, vol. 42, num. 12, p. 8138-8149, 2014.
12:15Twist and Stretch of Helices Explained via the Kirchhoff-Love Rod Model of Elastic Filaments, in Physical Review Letters, vol. 111, num. 10, 2013.
10:51Thermodynamics of Writhe in DNA Minicircles from Molecular Dynamics Simulations, in Physical Review Letters, vol. 110, num. 14, 2013.
09:33A sequence-dependent rigid-base model of DNA, in Journal Of Chemical Physics, vol. 138, num. 5, 2013.
15:08A DNA Coarse-Grain Rigid Base Model and Parameter Estimation from Molecular Dynamics Simulations. Thèse EPFL, n° 5520 (2012)